It depends upon ur case fan arrangement too. For example, in my old cabinet, my temps were lower when I kept it open. But with my new cabinet which has fans on the side panel, temps rise insanely unless I put the cover on.
I find it better this way, coz I don't have to deal with tons of dust on my motherbord which seems to attract dust like hell. I guess it's the static electricity.
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Winchester 3200+ @2,500MHz
LeadTek 7900GT VOLT MODDED @ 680 core, 1800 mem
2x1GB Transcend DDR400 @ DDR454 2.5,3,3,5,1T
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